JupyterLab Extension for Onyx

Introduction

This is the documentation for Onyx-extension, an extension to JupyterLab that provides:

• : Access to the Onyx GUI, a graphical user interface for interacting with the Onyx database.
• : An S3 download utility.
• : Links to the CLIMB-TRE documentation.

Onyx is being developed as part of the CLIMB-TRE project.

Contents

Installation
Learn how to install the extension, or build it manually for development.

Graphical User Interface

Quick Start
Learn how to launch and navigate the Onyx interface.

Querying Data
Learn how to filter, summarise and export records and analyses.

Profiles & Sites
Learn how to view your profile, project permissions, latest activity, and other users from your site.